Tools for Systems biology modeling and data exchange - training course 2023
OverviewFAIRDOMHub-SEEK hands-on session
Programme: FAIRDOM-SEEK Training
SEEK ID: https://sandbox9.fairdomhub.org/projects/21
Public web page: Not specified
Organisms: Bacillus subtilis, Escherichia coli, Lactic acid bacteria, Homo sapiens, Rattus norvegicus, Saccharomyces cerevisiae, Streptomyces coelicolor
FAIRDOM PALs: No PALs for this Project
Project start date: 28th Nov 2023
Project end date: 30th Nov 2023
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Projects: Tools for Systems biology modeling and data exchange - training course 2023
Institutions: Training Institution
Projects: Tools for Systems biology modeling and data exchange - training course 2023
Institutions: Training Institution
Projects: Tools for Systems biology modeling and data exchange - training course 2023
Institutions: Training Institution
https://orcid.org/0000-0001-9770-6592
Projects: Tools for Systems biology modeling and data exchange - training course 2023
Institutions: Training Institution
Projects: Tools for Systems biology modeling and data exchange - training course 2023
Institutions: Training Institution
Projects: Tools for Systems biology modeling and data exchange - training course 2023
Institutions: Training Institution
Projects: Tools for Systems biology modeling and data exchange - training course 2023
Institutions: Training Institution
Projects: Tools for Systems biology modeling and data exchange - training course 2023
Institutions: Training Institution
Projects: FAIRDOM training, SEEK Hands-On Session, SysBio Happy Labs, Openbis Integration, 3D4D2 Training, Training for COST Action OneHealthDrugs, WG1 - Compound libraries coordination and integration of compound design, de.NBI Spring School, Tools for Systems biology modeling and data exchange - training course 2023, Workshop FAIRDOMHub / FAIRDOM-SEEK - training course 2024
Institutions: Heidelberg Institute for Theoretical Studies, HITS
Projects: de.NBI Spring School, Tools for Systems biology modeling and data exchange - training course 2023, Workshop FAIRDOMHub / FAIRDOM-SEEK - training course 2024
Web page: Not specified
Country: Not specified
City: Not specified
Web page: Not specified
Submitter: Masoud Sadeghi
Studies: Kinetic parameters and mass transfer studies, Test-study
Assays: Essay-test, Kinetic and thermodynamic experiments, Model TKS
Submitter: Froze Jameel
Investigation: Investigation E. Coli thermodynamic parameter
Assays: Essay-test, Model TKS
Submitter: Masoud Sadeghi
Investigation: Investigation E. Coli thermodynamic parameter
Submitter: Masoud Sadeghi
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Investigation E. Coli thermodynamic parameter
Submitter: Froze Jameel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Investigation E. Coli thermodynamic parameter
Study: Test-study
Submitter: Masoud Sadeghi
Biological problem addressed: Model Analysis Type
Investigation: Investigation E. Coli thermodynamic parameter
Study: Test-study
Submitter: Maja Rey
Provider Name: Not specified
Provider's strain ID: Not specified
Organism: Saccharomyces cerevisiae
Genotypes: wild-type
Phenotypes: wild-type
Comment: Not specified
Creator: Masoud Sadeghi
Submitter: Masoud Sadeghi
Creator: Masoud Sadeghi
Submitter: Masoud Sadeghi
Creator: Masoud Sadeghi
Submitter: Masoud Sadeghi
Model type: Bayesian network
Model format: SBML
Environment: AUTO2000
Abstract (Expand)
Authors: J. Weiszmann, D. Walther, P. Clauw, G. Back, J. Gunis, I. Reichardt, S. Koemeda, J. Jez, M. Nordborg, J. Schwarzerova, I. Pierides, T. Nagele, W. Weckwerth
Date Published: 22nd Sep 2023
Publication Type: Journal
Abstract (Expand)
Authors: M. Kessler, I. Wittig, J. Ackermann, I. Koch
Date Published: 27th Jul 2021
Publication Type: Journal
Abstract
Authors: Fabian Huxoll, Froze Jameel, Jonas Bianga, Thomas Seidensticker, Matthias Stein, Gabriele Sadowski, Dieter Vogt
Date Published: 15th Jan 2021
Publication Type: Journal
Abstract
Authors: Giovanna Loro, Stephan Wagner, Fabrizio Gandolfo Doccula, Smrutisanjita Behera, Stefan Weinl, Joerg Kudla, Markus Schwarzländer, Alex Costa, Michela Zottini
Date Published: 2nd Aug 2016
Publication Type: Journal
Abstract
Author: M. H. Rubinstein
Date Published: 1st Dec 1976
Publication Type: Journal
Abstract (Expand)
Authors: D. Nadeau, C. Marchand
Date Published: 1st Nov 1975
Publication Type: Journal
Abstract
Authors: A. Schmoldt, H. F. Benthe, G. Haberland
Date Published: 1st Sep 1975
Publication Type: Journal
Abstract
Editor:
Date Published: No date defined
Publication Type: Journal
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During this 3-day course, attendees will learn basic techniques for modeling of biochemical networks including data access and storage due to the FAIR principles. The first day introduces kinetic modeling techniques which will be illustrated and exercised with COPASI. The second day continues with principles of stoichiometric and constraint-based modeling coupled with hands on exercises using CellNetAnalyzer and a demonstration of CNApy. The third day SABIO-RK is used as a resource for kinetic ...
Start Date: 28th Nov 2023 (28th Nov 2023 (Etc/UTC))
End Date: 30th Nov 2023 (30th Nov 2023 (Etc/UTC))
Event Website: http://denbi-modsim.de/workshop_11-2023/
Country: 
Germany
City: Magdeburg
Creator: Masoud Sadeghi
Submitter: Masoud Sadeghi
