SEEK Hands-On Session
OverviewSEEK is introduced as a data and model management platform fitted to the needs of systems biologists to provide data access and storage due to the FAIR principles.
Programme: This Project is not associated with a Programme
SEEK ID: https://sandbox9.fairdomhub.org/projects/8
Public web page: Not specified
Organisms: Homo sapiens, Sulfolobus solfataricus, Hirundo rustica, Mus musculus, Rattus norvegicus
FAIRDOM PALs: No PALs for this Project
Project created: 5th Apr 2018
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Projects: Openbis Integration, SEEK Hands-On Session
Institutions: Heidelberg Institute for Theoretical Studies
Projects: SysBio Happy Labs, FAIRDOM training, SEEK Hands-On Session, seek_test
Institutions: Training Institution, Heidelberg Institute for Theoretical Studies
I am a researcher at the Scientific Databases and Visualization Group at Heidelberg Institute for Theoretical Studies (HITS) , one of the developers of SabioRK - System for the Analysis of Biochemical Pathways - Reaction Kinetics (http://sabiork.h-its.org/) . I am working on design and maintenance of the information systems to store, query and analyse systems biology data; definition and implementation of methods for the integration of data from multiple sources. In SySMO-DB project ...
Projects: SEEK Hands-On Session, Openbis Integration
Institutions: Heidelberg Institute for Theoretical Studies
Projects: SEEK Hands-On Session
Institutions: Training Institution
Projects: SEEK Hands-On Session
Institutions: Training Institution
Projects: SEEK Hands-On Session
Institutions: Training Institution
Projects: SEEK Hands-On Session
Institutions: Training Institution
Projects: SEEK Hands-On Session
Institutions: Training Institution
Projects: SEEK Hands-On Session
Institutions: Training Institution
Projects: SEEK Hands-On Session
Institutions: Training Institution
Projects: SEEK Hands-On Session
Institutions: Training Institution
Projects: SEEK Hands-On Session
Institutions: Training Institution
Projects: SEEK Hands-On Session
Institutions: Training Institution
Projects: SEEK Hands-On Session
Institutions: Training Institution
Projects: SEEK Hands-On Session
Institutions: Training Institution
Projects: SEEK Hands-On Session
Institutions: Training Institution
Projects: SEEK Hands-On Session
Institutions: Training Institution
Projects: SEEK Hands-On Session
Institutions: Training Institution
Projects: SEEK Hands-On Session
Institutions: Training Institution
just a test run
Submitter: Guest36 Profile
Investigation: GPCR signalling
just another test
Submitter: Maja Rey
Biological problem addressed: Metabolism
Investigation: 1 hidden item
Study: 1 hidden item
Submitter: Maja Rey
Biological problem addressed: Model Analysis Type
Investigation: 1 hidden item
Study: 1 hidden item
Submitter: Guest36 Profile
Assay type: SNP Detection
Technology type: SNP Array
Investigation: GPCR signalling
Submitter: Guest36 Profile
Biological problem addressed: Model Analysis Type
Investigation: GPCR signalling
Creator: Guest36 Profile
Submitter: Guest36 Profile
External Link
Jupyter Notebooks for an introduction to the Seek API
Creators: None
Submitter: Alain Becam
Download
Creator: Guest36 Profile
Submitter: Guest36 Profile
Creator: Guest36 Profile
Submitter: Guest36 Profile
Creators: None
Submitter: Alain Becam
Model type: Not specified
Model format: Not specified
Environment: Not specified
Creator: Guest36 Profile
Submitter: Guest36 Profile
Model type: Ordinary differential equations (ODE)
Model format: SBML
Environment: Not specified
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During this 3-day course, attendees will learn basic techniques for modeling of biochemical networks including data access and storage due to the FAIR principles. The first day introduces kinetic modeling techniques which will be illustrated and exercised with COPASI. The second day continues with principles of stoichiometric and constraint-based modeling coupled with hands on exercises using CellNetAnalyzer and a demonstration of CNApy. The third day SABIO-RK is used as a resource for kinetic ...
Start Date: 28th Nov 2023 (28th Nov 2023 (Etc/UTC))
End Date: 30th Nov 2023 (30th Nov 2023 (Etc/UTC))
Event Website: http://denbi-modsim.de/workshop_11-2023/
Country: 
Germany
City: Magdeburg
Session 4 Data Level: We will provide a general overview about data management including storage, sharing, interlinking, publishing, and curation of scientific data. This will allow developing a framework to integrate data generated in session 1, 2 and 3 by using the FAIRDOM-SEEK software.
Start Date: 15th Jun 2021
End Date: 16th Jun 2021
Event Website: https://ernestcostaction.wixsite.com/website/training-school-2021
Country: Not specified
City: online event
Variant ID (String) *, vf (String) , Location (String) , Chr: bp (String) , vf_allele (String) , Alleles (String) , gmaf_allele (String) , gmaf_freq (String) , Global MAF (String) , Class (String) , Source (String) , Evidence (String) , Clin. Sig. (String) , Conseq. Type (String) , AA (String) , AA coord (String) , AA coord_1 (String) , sift_sort (String) , sift_class (String) , SIFT (String) , polyphen_sort (String) , polyphen_class (String) , PolyPhen (String) , cadd_sort (String) , cadd_class (String) , CADD (String) , revel_sort (String) , revel_class (String) , REVEL (String) , meta_lr_sort (String) , meta_lr_class (String) , MetaLR (String) , mutation_assessor_sort (String) , mutation_assessor_class (String) , Mutation Assessor (String) , Transcript (String)
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id (String) *, species (NCBI ID) *, date (Date) *
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